Tripal Analysis Expression lets you load in biomaterials and expression data into Chado. It provides heatmap and bar plot visualizations.

Analysis Expression is a huge module that we’ve split into three submodules:

Tripal Biomaterial

  • Load in NCBI Biosamples in XML format.
  • Full support for ontologies in Biosample properties.

Tripal Analysis Expression

  • Load in NGS or microarray expression data!
  • Generates heatmaps for list of features with plot.ly.
  • Display D3.js expression graphs on feature pages.

Tripal Protocol

  • Deals with the Protocol, Assay, Arraydesign MAGE tables.
  • Needs collaborators!