Outputs

_site.yml
01_index_genome.html
01_index_genome.Rmd
02_mapping.html
02_mapping.Rmd
03_sam_to_sorted_bam.html
03_sam_to_sorted_bam.Rmd
04_mapping_evaluation.html
04_mapping_evaluation.Rmd
Aligned.out.sam
Aligned.out.sorted.bam
flagstat.sh
flagstat.txt
genome-indexing.log.txt
index-genome.sh
index.Rmd
Log.final.out
Log.out
Log.progress.out
mapping.log.txt
mapping.sh
sam2bam.sh
SJ.out.tab
genomeDir
- chrLength.txt
- chrName.txt
- chrNameLength.txt
- chrStart.txt
- exonGeTrInfo.tab
- exonInfo.tab
- geneInfo.tab
- Genome
- genomeParameters.txt
- SA
- SAindex
- sjdbInfo.txt
- sjdbList.fromGTF.out.tab
- sjdbList.out.tab
- transcriptInfo.tab
site_libs
- bootstrap-3.3.5
- jquery-1.11.3
  - jquery.min.js
- navigation-1.1