cp /export/galaxy-central/database/files/000/dataset_26.dat read_1.fq
cp /export/galaxy-central/database/files/000/dataset_22.dat read_2.fq
fastqc \
-q \
/export/galaxy-central/database/job_working_directory/000/18/dataset_27_files/read_1.fq > read_1.log.txt 2>&1
fastqc \
-q \
/export/galaxy-central/database/job_working_directory/000/18/dataset_27_files/read_2.fq > read_2.log.txt 2>&1| MODULE | Pre-trimming | Post-trimming |
|---|---|---|
| Basic Statistics | PASS | PASS |
| Per base sequence quality | PASS | PASS |
| Per tile sequence quality | PASS | PASS |
| Per sequence quality scores | PASS | PASS |
| Per base sequence content | FAIL (X) | FAIL (X) |
| Per sequence GC content | FAIL (X) | FAIL (X) |
| Per base N content | PASS | PASS |
| Sequence Length Distribution | WARN (!) | WARN (!) |
| Sequence Duplication Levels | PASS | PASS |
| Overrepresented sequences | FAIL (X) | FAIL (X) |
| Adapter Content | PASS | PASS |
| Kmer Content | WARN (!) | WARN (!) |