FastQC
Evaluation Overview
Evaluation by data module
Per Base Sequence Quality
Per Tile Sequence Quality
Per Sequence Quality Score
Per Base Sequence Content
Per Sequence GC Content
Per Base N Content
Sequence Length Distribution
Sequence Duplication Levels
Adapter Content
Kmer Content
Outputs
_site.yml
01_evaluation_overview.html
01_evaluation_overview.Rmd
02_per_base_sequence_quality.html
02_per_base_sequence_quality.Rmd
03_per_tile_sequence_quality.html
03_per_tile_sequence_quality.Rmd
04_per_sequence_quality_score.html
04_per_sequence_quality_score.Rmd
05_per_base_sequence_content.html
05_per_base_sequence_content.Rmd
06_per_sequence_gc_content.html
06_per_sequence_gc_content.Rmd
07_per_base_n_content.html
07_per_base_n_content.Rmd
08_sequence_length_distribution.html
08_sequence_length_distribution.Rmd
09_sequence_duplication_levels.html
09_sequence_duplication_levels.Rmd
10_adapter_content.html
10_adapter_content.Rmd
11_kmer_content.html
11_kmer_content.Rmd
index.Rmd
job-1-script.sh
read_1_fastqc.html
read_1_fastqc.zip
read_1.fq
read_1.log.txt
read_2_fastqc.html
read_2_fastqc.zip
read_2.fq
read_2.log.txt
02_per_base_sequence_quality_files
figure-html
per base sequence quality-1.png
04_per_sequence_quality_score_files
figure-html
Per sequence quality score-1.png
09_sequence_duplication_levels_files
figure-html
Sequence Duplication Levels-1.png
read_1_fastqc
fastqc_data.txt
fastqc_report.html
fastqc.fo
summary.txt
Icons
error.png
fastqc_icon.png
tick.png
warning.png
Images
adapter_content.png
duplication_levels.png
kmer_profiles.png
per_base_n_content.png
per_base_quality.png
per_base_sequence_content.png
per_sequence_gc_content.png
per_sequence_quality.png
per_tile_quality.png
sequence_length_distribution.png
read_2_fastqc
fastqc_data.txt
fastqc_report.html
fastqc.fo
summary.txt
Icons
error.png
fastqc_icon.png
tick.png
warning.png
Images
adapter_content.png
duplication_levels.png
kmer_profiles.png
per_base_n_content.png
per_base_quality.png
per_base_sequence_content.png
per_sequence_gc_content.png
per_sequence_quality.png
per_tile_quality.png
sequence_length_distribution.png
site_libs
bootstrap-3.3.5
css
bootstrap-theme.css
bootstrap-theme.css.map
bootstrap-theme.min.css
bootstrap.css
bootstrap.css.map
bootstrap.min.css
cerulean.min.css
cosmo.min.css
flatly.min.css
journal.min.css
lumen.min.css
paper.min.css
readable.min.css
sandstone.min.css
simplex.min.css
spacelab.min.css
united.min.css
yeti.min.css
fonts
Lato.ttf
LatoBold.ttf
LatoItalic.ttf
NewsCycle.ttf
NewsCycleBold.ttf
OpenSans.ttf
OpenSansBold.ttf
OpenSansBoldItalic.ttf
OpenSansItalic.ttf
OpenSansLight.ttf
OpenSansLightItalic.ttf
Raleway.ttf
RalewayBold.ttf
Roboto.ttf
RobotoBold.ttf
RobotoLight.ttf
RobotoMedium.ttf
SourceSansPro.ttf
SourceSansProBold.ttf
SourceSansProItalic.ttf
SourceSansProLight.ttf
Ubuntu.ttf
fonts
glyphicons-halflings-regular.eot
glyphicons-halflings-regular.svg
glyphicons-halflings-regular.ttf
glyphicons-halflings-regular.woff
glyphicons-halflings-regular.woff2
js
bootstrap.js
bootstrap.min.js
npm.js
shim
html5shiv.min.js
respond.min.js
highlightjs-1.1
default.css
highlight.js
textmate.css
htmlwidgets-1.0
htmlwidgets.js
jquery-1.11.3
jquery.min.js
navigation-1.1
codefolding.js
FileSaver.min.js
sourceembed.js
tabsets.js
plotly-binding-4.5.6
plotly.js
plotlyjs-1.16.3
LICENSE
plotly-htmlwidgets.css
plotly-latest.min.js
